shinyGISPA

Gene Integrated Set Profile Analysis with Shiny

Analysis Type


Data Input


Data Input 1


Define Samples


Data Input 2


Define Samples


Data Input 3


Define Samples


Changepoint Input


Display








shinyGISPA is a product of the Biostatistics and Bioinformatics Shared Resource of Winship Cancer Institute of Emory University (https://bbisr.winship.emory.edu).


This work is funded by the Leukemia and Lymphoma Society Translational Research Program Award (Jeanne Kowalski); Georgia Research Alliance Scientist Award (Jeanne Kowalski); a Team Science Seed Funding from the Winship Cancer Institute of Emory University (Lawrence H. Boise, Sagar Lonial, Michael R. Rossi); Biostatistics and Bioinformatics Shared Resource of Winship Cancer Institute of Emory University and NIH/NCI [Award number P30CA138292, in part]. The content is solely the responsibility of the authors and does not necessarily represent the official views of the NIH.


Bioconductor R package for GISPA is available at the https://www.bioconductor.org/packages/GISPA


Please cite the GISPA method as: Kowalski J, Dwivedi B, Newman S, Switchenko JM, Pauly R, Gutman DA, Arora J, Gandhi K, Ainslie K, Doho G, Qin Z, Moreno CS, Rossi MR, Vertino PM, Lonial S, Bernal-Mizrachi L, Boise LH. Gene integrated set profile analysis: a context-based approach for inferring biological endpoints. Nucleic Acids Res. 2016 Apr 20;44(7):e69. doi: 10.1093/nar/gkv1503. Epub 2016 Jan 29. PubMed PMID: 26826710; PubMed Central PMCID: PMC4838358.












GISPA is a product of the Biostatistics and Bioinformatics Shared Resource of Winship Cancer Institute of Emory University (https://bbisr.winship.emory.edu).


This work is funded by the Leukemia and Lymphoma Society Translational Research Program Award (Jeanne Kowalski); Georgia Research Alliance Scientist Award (Jeanne Kowalski); a Team Science Seed Funding from the Winship Cancer Institute of Emory University (Lawrence H. Boise, Sagar Lonial, Michael R. Rossi); Biostatistics and Bioinformatics Shared Resource of Winship Cancer Institute of Emory University and NIH/NCI [Award number P30CA138292, in part]. The content is solely the responsibility of the authors and does not necessarily represent the official views of the NIH.


Bioconductor R package for GISPA is available at the https://www.bioconductor.org/packages/GISPA


Please cite the GISPA method as: Kowalski J, Dwivedi B, Newman S, Switchenko JM, Pauly R, Gutman DA, Arora J, Gandhi K, Ainslie K, Doho G, Qin Z, Moreno CS, Rossi MR, Vertino PM, Lonial S, Bernal-Mizrachi L, Boise LH. Gene integrated set profile analysis: a context-based approach for inferring biological endpoints. Nucleic Acids Res. 2016 Apr 20;44(7):e69. doi: 10.1093/nar/gkv1503. Epub 2016 Jan 29. PubMed PMID: 26826710; PubMed Central PMCID: PMC4838358.










GISPA is a product of the Biostatistics and Bioinformatics Shared Resource of Winship Cancer Institute of Emory University (https://bbisr.winship.emory.edu).


This work is funded by the Leukemia and Lymphoma Society Translational Research Program Award (Jeanne Kowalski); Georgia Research Alliance Scientist Award (Jeanne Kowalski); a Team Science Seed Funding from the Winship Cancer Institute of Emory University (Lawrence H. Boise, Sagar Lonial, Michael R. Rossi); Biostatistics and Bioinformatics Shared Resource of Winship Cancer Institute of Emory University and NIH/NCI [Award number P30CA138292, in part]. The content is solely the responsibility of the authors and does not necessarily represent the official views of the NIH.


Bioconductor R package for GISPA is available at the https://www.bioconductor.org/packages/GISPA


Please cite the GISPA method as: Kowalski J, Dwivedi B, Newman S, Switchenko JM, Pauly R, Gutman DA, Arora J, Gandhi K, Ainslie K, Doho G, Qin Z, Moreno CS, Rossi MR, Vertino PM, Lonial S, Bernal-Mizrachi L, Boise LH. Gene integrated set profile analysis: a context-based approach for inferring biological endpoints. Nucleic Acids Res. 2016 Apr 20;44(7):e69. doi: 10.1093/nar/gkv1503. Epub 2016 Jan 29. PubMed PMID: 26826710; PubMed Central PMCID: PMC4838358.


Sample Colors


Data Type Colors